PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Mapoly0057s0042.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia
Family Trihelix
Protein Properties Length: 412aa    MW: 45614.2 Da    PI: 4.3444
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Mapoly0057s0042.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix51.23.3e-16164248286
             trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                          Wt+  ++aL+ea  ++  +l++g+lk+ +Weev++++ +  + +++ +qCk++++ l+k+yk +k+ ++   s +s ++p++++l+
  Mapoly0057s0042.1.p 164 WTEGATHALLEAWGDRYVQLNKGNLKQEDWEEVAEVVsSMSKSHKTDVQCKNRLDTLKKKYKVEKHKQSAIGSLDS-KWPFYKRLD 248
                          *************************************5556779*************************9999998.9******98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138372.5E-24161250No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 412 aa     Download sequence    Send to blast
MDDDDDDAHL PYHNAHHHLY ETTDPHHGAN VQENDDDGEE EDEEEEEDEE EDEDDEDEDE  60
NIDDDEDEDE GDQEHQEYEQ DFELEHSHKR SVVAKATGNG NLRSNATSAP ALALYQPEIA  120
CPSGRIEGGG GGVAGAGPGT GPAGSAAAAA AAVGGDKYSG RDDWTEGATH ALLEAWGDRY  180
VQLNKGNLKQ EDWEEVAEVV SSMSKSHKTD VQCKNRLDTL KKKYKVEKHK QSAIGSLDSK  240
WPFYKRLDQL LSATVKRAGI PGGVDAGVPV KSSLDREDTN RRSGRKHEDE NFNNTSTSSK  300
SKESAEMTFS SPLDDADAPG TDGTQSSRKR KAMDTPFKTL AKAITRFGEI YEKMEYSKQQ  360
QLMDLEKIRM EFTRDLELQR MQLFMQTQVE LAKMKHGSSE IDPTVSSNLS Q*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00413DAPTransfer from AT3G58630Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002971286.16e-66hypothetical protein SELMODRAFT_68039, partial
TrEMBLD8RJB47e-66D8RJB4_SELML; Putative uncharacterized protein (Fragment)
STRINGEFJ278842e-65(Selaginella moellendorffii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP4871684
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58630.11e-43sequence-specific DNA binding transcription factors